PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG419900.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 395aa    MW: 44075.9 Da    PI: 6.5936
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG419900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.90.00041751041445
                          HHHHHHHHHHHCTSCCC...TTS-.STCHHHHH CS
                  HLH  14 driNsafeeLrellPkaskapskK.lsKaeiLe 45 
                          ++i ++++eLr +l ++   +++K  s +++L+
  Pavir.3KG419900.1.p  75 ENISERIQELRAMLASS---KKRKeRSSSQTLR 104
                          79**************9...88888*******8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF540012.55E-10181379No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MERAESCSST TNPATQVGKG CIDTNVLAET TTAEALPGTS NVKEDQGSQH PDTMEIEKGL  60
AYCSEGVTTI QNWCENISER IQELRAMLAS SKKRKERSSS QTLRTPPFAL DLSGTSPEED  120
IMKGKTTHAS AGGGSSSGRE ATSQRLYPNL KSYIVWVDVK GRLPVRLTGN QIKMGILKPV  180
ELDSNIIAAT VRLLSEFERN MILHRSNGAS RHYIPPEWTS YVTAGNFEAH ISEQYFKNSP  240
TGYDLTTCNM LLAPVRFGQG WSCYAINVPE STLTVMDPFL KADAGNIRIQ WHQITARKVL  300
EEAIRCFDIV RSVDTAETTK WKVNIQLLTE VKCCTWDTGI YTMTCMRWYE PEVDVSIIRL  360
DERTAYEARK QLAHDLINME CNHAQLPHRL PTST*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-